PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016448188.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 348aa    MW: 37876.9 Da    PI: 7.8445
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016448188.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.70.00082129151123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     y+C+ C+++F++   L  H  +H
  XP_016448188.1 129 YECKTCNRTFPSFQALGGHRASH 151
                     99**********99999998887 PP

2zf-C2H213.40.00023244266123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++Cg  Fs+   L  H+r+H
  XP_016448188.1 244 HECSICGSEFSSGQALGGHMRKH 266
                     78********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.11E-8128151No hitNo description
PfamPF139124.9E-13128153IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.658129156IPR007087Zinc finger, C2H2
SMARTSM003550.052129151IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280131151IPR007087Zinc finger, C2H2
SuperFamilySSF576671.11E-8239266No hitNo description
PROSITE profilePS501579.91244271IPR007087Zinc finger, C2H2
SMARTSM003550.017244266IPR015880Zinc finger, C2H2-like
PfamPF139128.1E-11244267IPR007087Zinc finger, C2H2
PROSITE patternPS000280246266IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
METSQDFPER SYAFKGKRSK RSRPSSPLDI AGTMVTSSSS AAGGSDDGGG DVYYSSAIVQ  60
YSPTTSTTQI STTCTSEEDE DMANCLILLA QSGRRKVQVV TEVKKEKISS RKFTEMVNTT  120
TGKAGFFVYE CKTCNRTFPS FQALGGHRAS HKRPKTIVEE KKSVTIPATA TATAMASAST  180
AMATARVGAD SLVENHNDRH IENDQEEGRF NKISSPSFSV QMVNNNNNKG IISHGNSNSK  240
PKIHECSICG SEFSSGQALG GHMRKHKPPT TATVTNTKVS TNTHIETISN FSESSHDVGT  300
NYKEEEKSTR NFLSLDLNLP APPEDDRRET KFEQSLVFSA APLVDCHY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016448188.10.0PREDICTED: zinc finger protein ZAT5-like
TrEMBLK4D9P81e-105K4D9P8_SOLLC; Uncharacterized protein
STRINGSolyc11g066400.1.11e-105(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12622480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.12e-48C2H2 family protein